Sources and licenses
Stem Cell Line × Experiment Index v0.1, a metadata compilation that resolves public experiment records to Cellosaurus and hPSCreg identifiers. https://ryanmoalemi.com/stem-cell-repository The index compilation is CC BY 4.0. Source records stay under the terms below. This site does not redistribute raw sequence, microarray scans, or controlled-access genomes.
Cellosaurus
CC BY 4.0
Names, synonyms, and cross-references are reused with attribution. Release 56 (2026-06-25).
hPSCreg
Copyrights (not an open license)
The registry was not bulk-copied. Public line names that appear here come from Cellosaurus cross-references (CC BY 4.0) or, when the API is up, from the public name list only. Donor, consent, and genome fields are never stored. Each line links back to hpscreg.eu.
NCBI BioSample
NCBI places no restrictions on the molecular data; submitters may still hold rights
Public sample metadata only. Controlled-access records are skipped.
NCBI GEO
NCBI places no restrictions on the molecular data; submitters may still hold rights
Series and sample metadata via E-utilities. Raw measurements are not copied.
NCBI SRA
NCBI places no restrictions on the molecular data; submitters may still hold rights
RunInfo metadata (experiment, sample name, library strategy). Sequence files are not downloaded.
EBI ArrayExpress / BioStudies
EMBL-EBI adds no restrictions beyond the data owner's
Study metadata and SDRF sample tables only. Raw and processed matrices are not copied.
CZ CELLxGENE Discover
CC BY 4.0
Dataset-level Discover metadata. Cell-by-gene matrices are not copied. Census cell_line ontology ids are not expanded in v0.1.
ENCODE
Released data may be used without restrictions; cite ENCODE
Only accessions already cross-referenced by Cellosaurus. Files are not mirrored.
ClinicalTrials.gov
NLM terms; records are reusable with attribution
Study metadata for the iPSC/ESC/hPSC query. No participant-level data.