Stem Cell Line × Experiment Index v0.1, a metadata compilation that resolves public experiment records to Cellosaurus and hPSCreg identifiers. https://ryanmoalemi.com/stem-cell-repository

Index compilation license: CC BY 4.0.
You may share and adapt the index with attribution and an indication of changes.
Source records remain under the terms below. This archive does not contain raw reads,
expression matrices, or controlled-access donor genomes.

Cellosaurus (cellosaurus)
  License: CC BY 4.0
  Reuse: Names, synonyms, and cross-references are reused with attribution. Release 56 (2026-06-25).
  Site: https://www.cellosaurus.org/
  Terms: https://www.cellosaurus.org/faq

hPSCreg (hpscreg)
  License: Copyrights (not an open license)
  Reuse: The registry was not bulk-copied. Public line names that appear here come from Cellosaurus cross-references (CC BY 4.0) or, when the API is up, from the public name list only. Donor, consent, and genome fields are never stored. Each line links back to hpscreg.eu.
  Site: https://hpscreg.eu/
  Terms: https://hpscreg.eu/

NCBI BioSample (biosample)
  License: NCBI places no restrictions on the molecular data; submitters may still hold rights
  Reuse: Public sample metadata only. Controlled-access records are skipped.
  Site: https://www.ncbi.nlm.nih.gov/biosample/
  Terms: https://www.ncbi.nlm.nih.gov/home/about/policies/

NCBI GEO (geo)
  License: NCBI places no restrictions on the molecular data; submitters may still hold rights
  Reuse: Series and sample metadata via E-utilities. Raw measurements are not copied.
  Site: https://www.ncbi.nlm.nih.gov/geo/
  Terms: https://www.ncbi.nlm.nih.gov/home/about/policies/

NCBI SRA (sra)
  License: NCBI places no restrictions on the molecular data; submitters may still hold rights
  Reuse: RunInfo metadata (experiment, sample name, library strategy). Sequence files are not downloaded.
  Site: https://www.ncbi.nlm.nih.gov/sra/
  Terms: https://www.ncbi.nlm.nih.gov/home/about/policies/

EBI ArrayExpress / BioStudies (arrayexpress)
  License: EMBL-EBI adds no restrictions beyond the data owner's
  Reuse: Study metadata and SDRF sample tables only. Raw and processed matrices are not copied.
  Site: https://www.ebi.ac.uk/biostudies/arrayexpress
  Terms: https://www.ebi.ac.uk/training/online/courses/functional-genomics-iii-submitting-data/re-use-of-functional-genomics-data/

CZ CELLxGENE Discover (cellxgene)
  License: CC BY 4.0
  Reuse: Dataset-level Discover metadata. Cell-by-gene matrices are not copied. Census cell_line ontology ids are not expanded in v0.1.
  Site: https://cellxgene.cziscience.com/
  Terms: https://cellxgene.cziscience.com/docs/032__Contribute%20and%20Publish%20Data

ENCODE (encode)
  License: Released data may be used without restrictions; cite ENCODE
  Reuse: Only accessions already cross-referenced by Cellosaurus. Files are not mirrored.
  Site: https://www.encodeproject.org/
  Terms: https://www.encodeproject.org/help/citing-encode/

ClinicalTrials.gov (clinicaltrials)
  License: NLM terms; records are reusable with attribution
  Reuse: Study metadata for the iPSC/ESC/hPSC query. No participant-level data.
  Site: https://clinicaltrials.gov/
  Terms: https://clinicaltrials.gov/about-site/terms-conditions

Cellosaurus release referenced by this build: 56 (2026-06-25), via https://api.cellosaurus.org/.
Changes: free-text and cross-reference links were added by the Stem Cell Line × Experiment Index matcher.